Group Trees
The
phylogenetic trees for each Group were produced using Dave Vance’s SAPP web
site. Over the past several decades many different software approaches were
explored trying to find one which created diagrams useful to participants
especially in the visual output. These packages included Fluxus, Phylip,
Network, MEGA7, TreeView and others. The SAPP software creates a nice output
containing the information participants will find helpful in understanding the
relationships of those in each Group. SAPP is also very flexible in terms of
the information one can input to the program.
Per the SAPP
web page: Boxes are connected by lines of varying thickness, indicating how
confident SAPP is in those connections.
There are three "levels" of confidence - thick blue lines
based on unambiguous STR, SNP, or Genealogy data; thinner blue lines based on
less certain data (often on STR data alone), or thin grey lines where SAPP made
what it thought was the best decision among several close choices without clear
SNP or Genealogy support.
Within boxes
there are three labels - the kit or node number in the middle, TMRCA
calculations in green, and SNP and Genealogy labels in blue.
Trees cannot
be created for Groups with less than 3 members.
Detailed information about SAPP is available at http://www.jdvtools.com/FAQ/